Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RPUSD4Q96CM3 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 GAS7-202ENST00000396115 929 ntTSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 RNA5SP413-201ENST00000516373 109 ntBASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 AP003097.1-201ENST00000530657 1135 ntBASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 C1QL1P1-201ENST00000568105 661 ntBASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 LINC00602-201ENST00000629776 2065 ntBASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
RPUSD4Q96CM3 GAS2L1P1-201ENST00000420145 1480 ntBASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AL121761.2-201ENST00000598007 1648 ntBASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 HLA-L-209ENST00000420110 1011 ntBASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 HLA-A-209ENST00000638375 975 ntBASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC14.31□□□□□ -0.12
RPUSD4Q96CM3 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms