Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 FICD-205ENST00000552758 603 ntTSL 2 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 AL031598.1-201ENST00000561511 1773 ntBASIC16.68■□□□□ 0.26
BEST3Q8N1M1 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
BEST3Q8N1M1 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 AL353801.3-201ENST00000609898 542 ntBASIC16.67■□□□□ 0.26
BEST3Q8N1M1 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
BEST3Q8N1M1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 AL031008.1-201ENST00000619963 541 ntBASIC16.66■□□□□ 0.26
BEST3Q8N1M1 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
BEST3Q8N1M1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
BEST3Q8N1M1 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms