Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 AC009102.3-201ENST00000623118 1491 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 MIR1233-2-201ENST00000408138 82 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 MIR1233-1-201ENST00000408722 82 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 FAM197Y8-203ENST00000450145 560 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 IGHV3OR16-7-201ENST00000604106 360 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 AC064862.7-201ENST00000604520 867 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 AL592071.1-201ENST00000611956 408 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 AC124864.1-201ENST00000623408 392 ntBASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 CCNC-219ENST00000627680 896 ntTSL 5 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.57■□□□□ 0.88
SH3RF1Q7Z6J0 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 KRT18P58-201ENST00000527480 1120 ntBASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 AC104390.1-201ENST00000555663 520 ntBASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 FLJ13224-201ENST00000313737 1514 ntBASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SH3RF1Q7Z6J0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 RN7SL606P-201ENST00000472779 293 ntBASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
SH3RF1Q7Z6J0 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 LINC01126-201ENST00000623515 1646 ntBASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 AL031284.1-201ENST00000419297 478 ntBASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.54■□□□□ 0.88
SH3RF1Q7Z6J0 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms