Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
CDH13P55290 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH13P55290 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.6■□□□□ 0.41
CDH13P55290 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
CDH13P55290 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH13P55290 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.6■□□□□ 0.41
CDH13P55290 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.6■□□□□ 0.41
CDH13P55290 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDH13P55290 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH13P55290 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CDH13P55290 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDH13P55290 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.59■□□□□ 0.41
CDH13P55290 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.59■□□□□ 0.41
CDH13P55290 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CDH13P55290 DUTP2-201ENST00000519164 463 ntBASIC17.59■□□□□ 0.41
CDH13P55290 MIR3917-201ENST00000580971 93 ntBASIC17.59■□□□□ 0.41
CDH13P55290 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CDH13P55290 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC17.59■□□□□ 0.41
CDH13P55290 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CDH13P55290 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CDH13P55290 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
CDH13P55290 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
CDH13P55290 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDH13P55290 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDH13P55290 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDH13P55290 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
CDH13P55290 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CDH13P55290 AC080080.1-201ENST00000625121 2420 ntBASIC17.58■□□□□ 0.41
CDH13P55290 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CDH13P55290 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 PKD1P1-201ENST00000458669 6805 ntBASIC17.58■□□□□ 0.4
CDH13P55290 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.58■□□□□ 0.4
CDH13P55290 HMGA1P5-201ENST00000412453 271 ntBASIC17.58■□□□□ 0.4
CDH13P55290 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.58■□□□□ 0.4
CDH13P55290 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.58■□□□□ 0.4
CDH13P55290 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
CDH13P55290 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.58■□□□□ 0.4
CDH13P55290 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.58■□□□□ 0.4
CDH13P55290 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.58■□□□□ 0.4
CDH13P55290 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.58■□□□□ 0.4
CDH13P55290 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.58■□□□□ 0.4
CDH13P55290 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CDH13P55290 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CDH13P55290 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.57■□□□□ 0.4
CDH13P55290 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
CDH13P55290 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.57■□□□□ 0.4
CDH13P55290 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.57■□□□□ 0.4
CDH13P55290 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.57■□□□□ 0.4
CDH13P55290 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CDH13P55290 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CDH13P55290 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.57■□□□□ 0.4
CDH13P55290 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.57■□□□□ 0.4
CDH13P55290 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms