Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL8A1P27658 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC15.65■□□□□ 0.1
COL8A1P27658 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
COL8A1P27658 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
COL8A1P27658 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
COL8A1P27658 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
COL8A1P27658 Z98044.1-201ENST00000632503 1764 ntBASIC15.64■□□□□ 0.1
COL8A1P27658 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 AC073621.1-201ENST00000392730 636 ntBASIC15.64■□□□□ 0.09
COL8A1P27658 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 PRSS29P-201ENST00000440800 595 ntBASIC15.64■□□□□ 0.09
COL8A1P27658 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.64■□□□□ 0.09
COL8A1P27658 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.64■□□□□ 0.09
COL8A1P27658 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.64■□□□□ 0.09
COL8A1P27658 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 AC190387.1-201ENST00000551683 408 ntBASIC15.64■□□□□ 0.09
COL8A1P27658 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC15.64■□□□□ 0.09
COL8A1P27658 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.64■□□□□ 0.09
COL8A1P27658 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 AC063926.2-201ENST00000623766 1308 ntBASIC15.64■□□□□ 0.09
COL8A1P27658 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
COL8A1P27658 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
COL8A1P27658 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
COL8A1P27658 AL163051.1-201ENST00000569214 1512 ntBASIC15.63■□□□□ 0.09
COL8A1P27658 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
COL8A1P27658 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
COL8A1P27658 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
COL8A1P27658 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC15.63■□□□□ 0.09
COL8A1P27658 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 KRT18P27-201ENST00000427733 1299 ntBASIC15.63■□□□□ 0.09
COL8A1P27658 MKNK2P1-201ENST00000437526 628 ntBASIC15.63■□□□□ 0.09
COL8A1P27658 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
COL8A1P27658 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC15.63■□□□□ 0.09
COL8A1P27658 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 METTL23-205ENST00000588302 925 ntTSL 5 BASIC15.63■□□□□ 0.09
COL8A1P27658 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms