Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 KRT18P55-202ENST00000578578 1546 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC4P09017 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
HOXC4P09017 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
HOXC4P09017 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 RPS2P28-201ENST00000314255 741 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC4P09017 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 AL031284.1-201ENST00000419297 478 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 PRYP5-201ENST00000451909 266 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC4P09017 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HOXC4P09017 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.47■□□□□ 0.39
HOXC4P09017 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.47■□□□□ 0.39
HOXC4P09017 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC17.47■□□□□ 0.39
HOXC4P09017 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.47■□□□□ 0.39
HOXC4P09017 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HOXC4P09017 BX276092.7-203ENST00000637198 1536 ntBASIC17.47■□□□□ 0.39
HOXC4P09017 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.47■□□□□ 0.39
HOXC4P09017 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 AC004408.2-201ENST00000623613 2777 ntBASIC17.46■□□□□ 0.39
HOXC4P09017 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
HOXC4P09017 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC4P09017 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.46■□□□□ 0.39
HOXC4P09017 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXC4P09017 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC4P09017 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 SART3-203ENST00000546611 1184 ntBASIC17.46■□□□□ 0.39
HOXC4P09017 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
HOXC4P09017 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXC4P09017 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.46■□□□□ 0.39
HOXC4P09017 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 BX640515.1-201ENST00000617215 977 ntBASIC17.46■□□□□ 0.39
HOXC4P09017 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 AC079776.2-201ENST00000641154 1609 ntBASIC17.46■□□□□ 0.39
HOXC4P09017 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
HOXC4P09017 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.46■□□□□ 0.39
HOXC4P09017 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
HOXC4P09017 SIGLEC16-201ENST00000599858 1437 ntBASIC17.46■□□□□ 0.39
HOXC4P09017 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.38
HOXC4P09017 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
HOXC4P09017 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 AL353593.2-201ENST00000602529 1483 ntBASIC17.45■□□□□ 0.38
HOXC4P09017 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.45■□□□□ 0.38
HOXC4P09017 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
HOXC4P09017 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXC4P09017 AC021087.4-201ENST00000563761 564 ntBASIC17.45■□□□□ 0.38
HOXC4P09017 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.45■□□□□ 0.38
HOXC4P09017 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.45■□□□□ 0.38
HOXC4P09017 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms