Protein–RNA interactions for Protein: P04233

CD74, HLA class II histocompatibility antigen gamma chain, humanhuman

Predictions only

Length 296 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD74P04233 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC15.12■□□□□ 0.01
CD74P04233 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 KRT17P3-201ENST00000420566 1262 ntBASIC15.12■□□□□ 0.01
CD74P04233 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 AP002982.1-201ENST00000492365 877 ntBASIC15.12■□□□□ 0.01
CD74P04233 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC15.12■□□□□ 0.01
CD74P04233 DLX3-202ENST00000512495 834 ntTSL 2 BASIC15.12■□□□□ 0.01
CD74P04233 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.12■□□□□ 0.01
CD74P04233 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC15.12■□□□□ 0.01
CD74P04233 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC15.12■□□□□ 0.01
CD74P04233 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 AL031985.4-201ENST00000642138 673 ntBASIC15.12■□□□□ 0.01
CD74P04233 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC15.12■□□□□ 0.01
CD74P04233 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
CD74P04233 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
CD74P04233 AC132938.6-201ENST00000623828 1655 ntBASIC15.12■□□□□ 0.01
CD74P04233 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.12■□□□□ 0.01
CD74P04233 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CD74P04233 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
CD74P04233 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
CD74P04233 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC15.11■□□□□ 0.01
CD74P04233 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CD74P04233 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 KRT16P1-201ENST00000399124 1418 ntBASIC15.11■□□□□ 0.01
CD74P04233 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 KRT8P7-201ENST00000533003 1432 ntBASIC15.11■□□□□ 0.01
CD74P04233 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.11■□□□□ 0.01
CD74P04233 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.11■□□□□ 0.01
CD74P04233 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 AC069152.1-201ENST00000438030 544 ntBASIC15.11■□□□□ 0.01
CD74P04233 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC15.11■□□□□ 0.01
CD74P04233 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.11■□□□□ 0.01
CD74P04233 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CD74P04233 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CD74P04233 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.1■□□□□ 0.01
CD74P04233 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 PCDHA14-201ENST00000506751 2298 ntBASIC15.1■□□□□ 0.01
CD74P04233 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CD74P04233 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
CD74P04233 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.1■□□□□ 0.01
CD74P04233 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CD74P04233 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.1■□□□□ 0.01
CD74P04233 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CD74P04233 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
CD74P04233 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms