Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 AC018445.3-201ENST00000624177 1945 ntBASIC17.54■□□□□ 0.4
SDC3O75056 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
SDC3O75056 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SDC3O75056 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.54■□□□□ 0.4
SDC3O75056 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC3O75056 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 MIR1233-2-201ENST00000408138 82 ntBASIC17.53■□□□□ 0.4
SDC3O75056 MIR1233-1-201ENST00000408722 82 ntBASIC17.53■□□□□ 0.4
SDC3O75056 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.53■□□□□ 0.4
SDC3O75056 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SDC3O75056 AC020763.4-201ENST00000623414 4170 ntBASIC17.53■□□□□ 0.4
SDC3O75056 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 ESPNP-201ENST00000270691 2015 ntBASIC17.53■□□□□ 0.4
SDC3O75056 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
SDC3O75056 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.53■□□□□ 0.4
SDC3O75056 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SDC3O75056 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC3O75056 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.53■□□□□ 0.4
SDC3O75056 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 AC132938.6-201ENST00000623828 1655 ntBASIC17.52■□□□□ 0.4
SDC3O75056 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC3O75056 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
SDC3O75056 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC3O75056 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SDC3O75056 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.52■□□□□ 0.4
SDC3O75056 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.52■□□□□ 0.4
SDC3O75056 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 OR7E14P-202ENST00000530490 1290 ntBASIC17.52■□□□□ 0.4
SDC3O75056 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC17.52■□□□□ 0.4
SDC3O75056 AC012640.2-201ENST00000561606 901 ntBASIC17.52■□□□□ 0.4
SDC3O75056 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.52■□□□□ 0.4
SDC3O75056 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC3O75056 HCG11-201ENST00000411553 5696 ntBASIC17.52■□□□□ 0.39
SDC3O75056 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC3O75056 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
SDC3O75056 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SDC3O75056 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SDC3O75056 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 HLA-J-201ENST00000462773 1622 ntBASIC17.51■□□□□ 0.39
SDC3O75056 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
SDC3O75056 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 BX842568.4-201ENST00000421222 227 ntBASIC17.51■□□□□ 0.39
SDC3O75056 AC098831.1-202ENST00000438821 336 ntBASIC17.51■□□□□ 0.39
SDC3O75056 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.51■□□□□ 0.39
SDC3O75056 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.51■□□□□ 0.39
SDC3O75056 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC3O75056 AC025062.2-201ENST00000605477 670 ntBASIC17.51■□□□□ 0.39
SDC3O75056 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.51■□□□□ 0.39
SDC3O75056 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.51■□□□□ 0.39
SDC3O75056 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SDC3O75056 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SDC3O75056 LETM1P2-201ENST00000597330 2178 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms