Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
NPHP1O15259 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC22.6■■□□□ 1.21
NPHP1O15259 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC22.59■■□□□ 1.21
NPHP1O15259 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
NPHP1O15259 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC22.59■■□□□ 1.21
NPHP1O15259 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC22.59■■□□□ 1.21
NPHP1O15259 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC22.59■■□□□ 1.21
NPHP1O15259 KRT18P65-201ENST00000439811 1286 ntBASIC22.59■■□□□ 1.21
NPHP1O15259 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC22.59■■□□□ 1.21
NPHP1O15259 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
NPHP1O15259 PGAM5P1-201ENST00000518923 814 ntBASIC22.59■■□□□ 1.21
NPHP1O15259 AC012640.2-201ENST00000561606 901 ntBASIC22.59■■□□□ 1.21
NPHP1O15259 COX5A-202ENST00000562233 441 ntTSL 3 BASIC22.59■■□□□ 1.21
NPHP1O15259 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC22.59■■□□□ 1.21
NPHP1O15259 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC22.59■■□□□ 1.21
NPHP1O15259 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
NPHP1O15259 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
NPHP1O15259 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.59■■□□□ 1.21
NPHP1O15259 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.59■■□□□ 1.21
NPHP1O15259 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
NPHP1O15259 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 UPF3AP3-201ENST00000420996 769 ntBASIC22.58■■□□□ 1.21
NPHP1O15259 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC22.58■■□□□ 1.21
NPHP1O15259 HS6ST1P1-201ENST00000481504 1234 ntBASIC22.58■■□□□ 1.21
NPHP1O15259 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC22.58■■□□□ 1.21
NPHP1O15259 MTDHP4-201ENST00000600287 670 ntBASIC22.58■■□□□ 1.21
NPHP1O15259 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
NPHP1O15259 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
NPHP1O15259 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
NPHP1O15259 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC22.58■■□□□ 1.2
NPHP1O15259 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC22.58■■□□□ 1.2
NPHP1O15259 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC22.58■■□□□ 1.2
NPHP1O15259 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
NPHP1O15259 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.2
NPHP1O15259 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
NPHP1O15259 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC22.57■■□□□ 1.2
NPHP1O15259 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 SRP19-202ENST00000445150 833 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 AC034105.1-201ENST00000563488 319 ntBASIC22.57■■□□□ 1.2
NPHP1O15259 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC22.57■■□□□ 1.2
NPHP1O15259 AC025062.2-201ENST00000605477 670 ntBASIC22.57■■□□□ 1.2
NPHP1O15259 AC008735.5-201ENST00000623544 497 ntBASIC22.57■■□□□ 1.2
NPHP1O15259 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 AL499627.1-201ENST00000569373 2188 ntBASIC22.57■■□□□ 1.2
NPHP1O15259 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC22.57■■□□□ 1.2
NPHP1O15259 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
NPHP1O15259 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
NPHP1O15259 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
NPHP1O15259 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP1O15259 AC090340.1-201ENST00000620778 4980 ntBASIC22.56■■□□□ 1.2
NPHP1O15259 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC22.56■■□□□ 1.2
NPHP1O15259 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
NPHP1O15259 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC22.56■■□□□ 1.2
NPHP1O15259 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC22.56■■□□□ 1.2
NPHP1O15259 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.56■■□□□ 1.2
NPHP1O15259 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC22.56■■□□□ 1.2
NPHP1O15259 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC22.56■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms