Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 AC027601.4-201ENST00000611259 610 ntBASIC18.26■□□□□ 0.51
CHFRQ96EP1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 FAM197Y3-203ENST00000618346 717 ntBASIC18.26■□□□□ 0.51
CHFRQ96EP1 CAND2-206ENST00000626378 333 ntTSL 5 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
CHFRQ96EP1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHFRQ96EP1 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 PMPCAP1-201ENST00000508114 1576 ntBASIC18.25■□□□□ 0.51
CHFRQ96EP1 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 AL031598.1-201ENST00000561511 1773 ntBASIC18.25■□□□□ 0.51
CHFRQ96EP1 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 FAM220CP-201ENST00000395253 831 ntBASIC18.25■□□□□ 0.51
CHFRQ96EP1 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 KRT8P47-201ENST00000604727 1398 ntBASIC18.25■□□□□ 0.51
CHFRQ96EP1 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CHFRQ96EP1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CHFRQ96EP1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 AC120498.9-201ENST00000339021 3867 ntBASIC18.24■□□□□ 0.51
CHFRQ96EP1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 CD9-202ENST00000382515 1229 ntTSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 MED15P5-201ENST00000423150 992 ntBASIC18.24■□□□□ 0.51
CHFRQ96EP1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 UNC93B6-202ENST00000528242 690 ntBASIC18.24■□□□□ 0.51
CHFRQ96EP1 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
CHFRQ96EP1 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
CHFRQ96EP1 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 AC079776.2-201ENST00000641154 1609 ntBASIC18.23■□□□□ 0.51
CHFRQ96EP1 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 AC004817.3-201ENST00000602957 2129 ntBASIC18.23■□□□□ 0.51
CHFRQ96EP1 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
CHFRQ96EP1 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC18.23■□□□□ 0.51
CHFRQ96EP1 AC096633.1-201ENST00000422446 749 ntBASIC18.23■□□□□ 0.51
CHFRQ96EP1 AC005104.2-201ENST00000427818 678 ntBASIC18.23■□□□□ 0.51
CHFRQ96EP1 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms