Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 DRAXINP1-201ENST00000437611 948 ntBASIC16.15■□□□□ 0.18
CPNE4Q96A23 POR-209ENST00000439269 1858 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 AC124864.1-201ENST00000623408 392 ntBASIC16.15■□□□□ 0.18
CPNE4Q96A23 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 AC104581.1-202ENST00000635932 2618 ntBASIC16.15■□□□□ 0.18
CPNE4Q96A23 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CPNE4Q96A23 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
CPNE4Q96A23 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.18
CPNE4Q96A23 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC16.14■□□□□ 0.18
CPNE4Q96A23 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
CPNE4Q96A23 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CPNE4Q96A23 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.14■□□□□ 0.18
CPNE4Q96A23 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 FLYWCH1P1-201ENST00000460917 1874 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 AP002383.4-201ENST00000442518 975 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 HCG4P8-203ENST00000443049 980 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 RN7SL606P-201ENST00000472779 293 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 AC092329.2-201ENST00000598402 547 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 AC022898.2-201ENST00000616822 1312 ntBASIC16.14■□□□□ 0.17
CPNE4Q96A23 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CPNE4Q96A23 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.14■□□□□ 0.17
CPNE4Q96A23 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 AC246785.2-201ENST00000432512 513 ntBASIC16.13■□□□□ 0.17
CPNE4Q96A23 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 AC011840.4-201ENST00000578471 627 ntBASIC16.13■□□□□ 0.17
CPNE4Q96A23 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 AC132938.6-201ENST00000623828 1655 ntBASIC16.13■□□□□ 0.17
CPNE4Q96A23 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CPNE4Q96A23 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.13■□□□□ 0.17
CPNE4Q96A23 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.12■□□□□ 0.17
CPNE4Q96A23 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CPNE4Q96A23 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms