Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AC128688.1-201ENST00000487626 519 ntBASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 FAM87A-204ENST00000613235 858 ntBASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLHC1Q8NHS4 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 MMP23A-201ENST00000234610 1017 ntBASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 PP12613-201ENST00000424958 2230 ntBASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17.3■□□□□ 0.36
CLHC1Q8NHS4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 AC100803.2-201ENST00000562459 1963 ntBASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 MIR3180-4-201ENST00000582223 153 ntBASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 KRT18P55-202ENST00000578578 1546 ntBASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 AC132938.6-201ENST00000623828 1655 ntBASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLHC1Q8NHS4 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 AC139713.2-201ENST00000641328 2723 ntBASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CLHC1Q8NHS4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms