Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
USP54Q70EL1 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC23.81■■□□□ 1.4
USP54Q70EL1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
USP54Q70EL1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC23.81■■□□□ 1.4
USP54Q70EL1 AC010507.1-201ENST00000633895 436 ntBASIC23.81■■□□□ 1.4
USP54Q70EL1 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
USP54Q70EL1 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 ACTG1P4-201ENST00000425123 1122 ntBASIC23.8■■□□□ 1.4
USP54Q70EL1 KRT18P2-201ENST00000447938 1258 ntBASIC23.8■■□□□ 1.4
USP54Q70EL1 RPS15P9-201ENST00000494093 319 ntBASIC23.8■■□□□ 1.4
USP54Q70EL1 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC23.8■■□□□ 1.4
USP54Q70EL1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC23.8■■□□□ 1.4
USP54Q70EL1 AC005593.1-201ENST00000624894 515 ntBASIC23.8■■□□□ 1.4
USP54Q70EL1 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 HARS-201ENST00000307633 1780 ntTSL 2 BASIC23.8■■□□□ 1.4
USP54Q70EL1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC23.8■■□□□ 1.4
USP54Q70EL1 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC23.8■■□□□ 1.4
USP54Q70EL1 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC23.8■■□□□ 1.4
USP54Q70EL1 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP54Q70EL1 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC23.79■■□□□ 1.4
USP54Q70EL1 AC023274.1-201ENST00000418278 595 ntBASIC23.79■■□□□ 1.4
USP54Q70EL1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
USP54Q70EL1 PC-208ENST00000529047 1607 ntTSL 3 BASIC23.79■■□□□ 1.4
USP54Q70EL1 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
USP54Q70EL1 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC23.79■■□□□ 1.4
USP54Q70EL1 IGHV3-65-201ENST00000523210 341 ntBASIC23.79■■□□□ 1.4
USP54Q70EL1 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC23.79■■□□□ 1.4
USP54Q70EL1 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC23.79■■□□□ 1.4
USP54Q70EL1 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC23.79■■□□□ 1.4
USP54Q70EL1 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP54Q70EL1 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC23.78■■□□□ 1.4
USP54Q70EL1 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.78■■□□□ 1.4
USP54Q70EL1 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 ADH5P3-201ENST00000433842 1137 ntBASIC23.78■■□□□ 1.4
USP54Q70EL1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
USP54Q70EL1 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC23.78■■□□□ 1.4
USP54Q70EL1 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
USP54Q70EL1 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP54Q70EL1 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC23.77■■□□□ 1.4
USP54Q70EL1 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
USP54Q70EL1 GGCT-205ENST00000409436 954 ntTSL 3 BASIC23.77■■□□□ 1.4
USP54Q70EL1 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC23.77■■□□□ 1.4
USP54Q70EL1 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
USP54Q70EL1 AC018845.2-201ENST00000568326 409 ntBASIC23.77■■□□□ 1.4
USP54Q70EL1 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC23.77■■□□□ 1.4
USP54Q70EL1 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.77■■□□□ 1.4
USP54Q70EL1 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC23.77■■□□□ 1.4
USP54Q70EL1 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.77■■□□□ 1.4
USP54Q70EL1 AC134684.3-201ENST00000641758 218 ntBASIC23.77■■□□□ 1.4
USP54Q70EL1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC23.77■■□□□ 1.4
USP54Q70EL1 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.77■■□□□ 1.4
USP54Q70EL1 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC23.77■■□□□ 1.4
USP54Q70EL1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP54Q70EL1 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC23.77■■□□□ 1.39
USP54Q70EL1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP54Q70EL1 AC002558.1-201ENST00000488906 803 ntBASIC23.76■■□□□ 1.39
USP54Q70EL1 AC109462.3-201ENST00000573934 613 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms