Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SRP54P61011 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.73■□□□□ 0.43
SRP54P61011 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.73■□□□□ 0.43
SRP54P61011 AL160237.2-201ENST00000556165 472 ntBASIC17.73■□□□□ 0.43
SRP54P61011 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
SRP54P61011 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
SRP54P61011 AC114341.1-201ENST00000618070 349 ntBASIC17.73■□□□□ 0.43
SRP54P61011 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.73■□□□□ 0.43
SRP54P61011 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC17.73■□□□□ 0.43
SRP54P61011 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SRP54P61011 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.73■□□□□ 0.43
SRP54P61011 AP000974.1-201ENST00000623909 2387 ntBASIC17.73■□□□□ 0.43
SRP54P61011 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 AC004408.2-201ENST00000623613 2777 ntBASIC17.73■□□□□ 0.43
SRP54P61011 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
SRP54P61011 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
SRP54P61011 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
SRP54P61011 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.72■□□□□ 0.43
SRP54P61011 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.72■□□□□ 0.43
SRP54P61011 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 AKR1C7P-201ENST00000305623 895 ntBASIC17.72■□□□□ 0.43
SRP54P61011 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.72■□□□□ 0.43
SRP54P61011 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 THAP5-204ENST00000438865 868 ntTSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 SAPCD2P3-201ENST00000455031 850 ntBASIC17.72■□□□□ 0.43
SRP54P61011 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.72■□□□□ 0.43
SRP54P61011 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.72■□□□□ 0.43
SRP54P61011 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.72■□□□□ 0.43
SRP54P61011 AL121912.1-201ENST00000603683 238 ntBASIC17.72■□□□□ 0.43
SRP54P61011 REXO1L6P-202ENST00000619970 1078 ntBASIC17.72■□□□□ 0.43
SRP54P61011 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.72■□□□□ 0.43
SRP54P61011 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SRP54P61011 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SRP54P61011 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SRP54P61011 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 TP73-AS1-210ENST00000637775 1455 ntBASIC17.71■□□□□ 0.43
SRP54P61011 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 AC009078.2-202ENST00000463353 338 ntBASIC17.71■□□□□ 0.43
SRP54P61011 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.71■□□□□ 0.43
SRP54P61011 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.71■□□□□ 0.43
SRP54P61011 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SRP54P61011 AC009533.2-201ENST00000543664 586 ntBASIC17.71■□□□□ 0.43
SRP54P61011 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.71■□□□□ 0.43
SRP54P61011 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.71■□□□□ 0.43
SRP54P61011 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
SRP54P61011 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SRP54P61011 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms