Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.11■□□□□ 0.17
CLRN1P58418 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLRN1P58418 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 AC008764.6-201ENST00000595909 2069 ntBASIC16.11■□□□□ 0.17
CLRN1P58418 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
CLRN1P58418 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC16.11■□□□□ 0.17
CLRN1P58418 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.11■□□□□ 0.17
CLRN1P58418 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 FAM8A6P-201ENST00000407496 1135 ntBASIC16.11■□□□□ 0.17
CLRN1P58418 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.11■□□□□ 0.17
CLRN1P58418 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 PPOX-219ENST00000544598 813 ntTSL 2 BASIC16.11■□□□□ 0.17
CLRN1P58418 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.11■□□□□ 0.17
CLRN1P58418 AL136038.4-201ENST00000603606 1261 ntBASIC16.11■□□□□ 0.17
CLRN1P58418 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLRN1P58418 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC16.11■□□□□ 0.17
CLRN1P58418 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
CLRN1P58418 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CLRN1P58418 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN1P58418 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.1■□□□□ 0.17
CLRN1P58418 AC068880.1-201ENST00000507289 2297 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CLRN1P58418 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 STARP1-201ENST00000397973 869 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 AK4P3-201ENST00000418260 669 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 SLC25A6P5-201ENST00000435663 894 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.1■□□□□ 0.17
CLRN1P58418 AC092647.4-201ENST00000457211 535 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.1■□□□□ 0.17
CLRN1P58418 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.1■□□□□ 0.17
CLRN1P58418 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC16.1■□□□□ 0.17
CLRN1P58418 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 AC024563.2-201ENST00000603282 481 ntBASIC16.1■□□□□ 0.17
CLRN1P58418 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.1■□□□□ 0.17
CLRN1P58418 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CLRN1P58418 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.1■□□□□ 0.17
CLRN1P58418 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CLRN1P58418 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 AL391807.1-203ENST00000604392 2365 ntBASIC16.09■□□□□ 0.17
CLRN1P58418 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN1P58418 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CLRN1P58418 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN1P58418 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN1P58418 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.09■□□□□ 0.17
CLRN1P58418 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 RNF152P1-201ENST00000397754 604 ntBASIC16.09■□□□□ 0.17
CLRN1P58418 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CLRN1P58418 SPDYE15P-201ENST00000424157 909 ntBASIC16.09■□□□□ 0.17
CLRN1P58418 TSPY5P-201ENST00000426936 936 ntBASIC16.09■□□□□ 0.17
CLRN1P58418 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CLRN1P58418 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.09■□□□□ 0.17
CLRN1P58418 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CLRN1P58418 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.09■□□□□ 0.17
CLRN1P58418 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.09■□□□□ 0.17
CLRN1P58418 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms