Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC17.09■□□□□ 0.33
LIM2P55344 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.09■□□□□ 0.33
LIM2P55344 AC011498.5-201ENST00000592027 486 ntBASIC17.09■□□□□ 0.33
LIM2P55344 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.09■□□□□ 0.33
LIM2P55344 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.09■□□□□ 0.33
LIM2P55344 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.09■□□□□ 0.33
LIM2P55344 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.09■□□□□ 0.33
LIM2P55344 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 AC138028.4-201ENST00000564984 1845 ntBASIC17.09■□□□□ 0.33
LIM2P55344 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LIM2P55344 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIM2P55344 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
LIM2P55344 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIM2P55344 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.33
LIM2P55344 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.08■□□□□ 0.33
LIM2P55344 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.33
LIM2P55344 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
LIM2P55344 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.08■□□□□ 0.33
LIM2P55344 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 UBC-206ENST00000538617 1303 ntTSL 5 BASIC17.08■□□□□ 0.32
LIM2P55344 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.08■□□□□ 0.32
LIM2P55344 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC17.08■□□□□ 0.32
LIM2P55344 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.08■□□□□ 0.32
LIM2P55344 AC116407.4-201ENST00000623319 1061 ntBASIC17.08■□□□□ 0.32
LIM2P55344 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
LIM2P55344 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.08■□□□□ 0.32
LIM2P55344 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 AC134043.2-201ENST00000624206 2238 ntBASIC17.08■□□□□ 0.32
LIM2P55344 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
LIM2P55344 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.08■□□□□ 0.32
LIM2P55344 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 FLJ13224-201ENST00000313737 1514 ntBASIC17.07■□□□□ 0.32
LIM2P55344 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LIM2P55344 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
LIM2P55344 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.07■□□□□ 0.32
LIM2P55344 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LIM2P55344 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 TSPY22P-201ENST00000427496 604 ntBASIC17.07■□□□□ 0.32
LIM2P55344 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.07■□□□□ 0.32
LIM2P55344 DUTP2-201ENST00000519164 463 ntBASIC17.07■□□□□ 0.32
LIM2P55344 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LIM2P55344 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
LIM2P55344 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms