Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCPP55072 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VCPP55072 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VCPP55072 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VCPP55072 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.28■□□□□ 0.68
VCPP55072 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC19.27■□□□□ 0.68
VCPP55072 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 AL133373.2-201ENST00000623187 2828 ntBASIC19.27■□□□□ 0.68
VCPP55072 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
VCPP55072 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.27■□□□□ 0.68
VCPP55072 AC074051.2-201ENST00000565115 352 ntBASIC19.27■□□□□ 0.68
VCPP55072 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.27■□□□□ 0.68
VCPP55072 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC19.27■□□□□ 0.68
VCPP55072 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VCPP55072 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.27■□□□□ 0.68
VCPP55072 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCPP55072 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCPP55072 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCPP55072 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
VCPP55072 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
VCPP55072 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC19.27■□□□□ 0.67
VCPP55072 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.26■□□□□ 0.67
VCPP55072 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC19.26■□□□□ 0.67
VCPP55072 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
VCPP55072 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC19.26■□□□□ 0.67
VCPP55072 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
VCPP55072 TLE1-202ENST00000376484 666 ntTSL 3 BASIC19.26■□□□□ 0.67
VCPP55072 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 HLA-F-220ENST00000434407 884 ntBASIC19.26■□□□□ 0.67
VCPP55072 KRT18P23-201ENST00000435622 1283 ntBASIC19.26■□□□□ 0.67
VCPP55072 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.26■□□□□ 0.67
VCPP55072 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.26■□□□□ 0.67
VCPP55072 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC19.26■□□□□ 0.67
VCPP55072 AL139424.1-201ENST00000607572 797 ntBASIC19.26■□□□□ 0.67
VCPP55072 AL157888.1-201ENST00000631930 593 ntBASIC19.26■□□□□ 0.67
VCPP55072 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
VCPP55072 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
VCPP55072 LINC00167-201ENST00000530583 1419 ntBASIC19.25■□□□□ 0.67
VCPP55072 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
VCPP55072 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.25■□□□□ 0.67
VCPP55072 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.25■□□□□ 0.67
VCPP55072 AC099336.1-202ENST00000602961 463 ntBASIC19.25■□□□□ 0.67
VCPP55072 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
VCPP55072 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.25■□□□□ 0.67
VCPP55072 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
VCPP55072 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
VCPP55072 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
VCPP55072 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
VCPP55072 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC19.24■□□□□ 0.67
VCPP55072 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
VCPP55072 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 MIR662-201ENST00000384847 95 ntBASIC19.24■□□□□ 0.67
VCPP55072 FABP5-202ENST00000396359 986 ntTSL 5 BASIC19.24■□□□□ 0.67
VCPP55072 GGCT-205ENST00000409436 954 ntTSL 3 BASIC19.24■□□□□ 0.67
VCPP55072 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
VCPP55072 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.24■□□□□ 0.67
VCPP55072 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
VCPP55072 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms