Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN4AP35499 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SCN4AP35499 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN4AP35499 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SCN4AP35499 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 GK-202ENST00000378941 458 ntTSL 3 BASIC21.12■□□□□ 0.97
SCN4AP35499 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN4AP35499 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN4AP35499 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.12■□□□□ 0.97
SCN4AP35499 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN4AP35499 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN4AP35499 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SCN4AP35499 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN4AP35499 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 KRT18P32-201ENST00000424695 1287 ntBASIC21.11■□□□□ 0.97
SCN4AP35499 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SCN4AP35499 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
SCN4AP35499 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 TSPY16P-201ENST00000449843 468 ntBASIC21.11■□□□□ 0.97
SCN4AP35499 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN4AP35499 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
SCN4AP35499 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.1■□□□□ 0.97
SCN4AP35499 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.1■□□□□ 0.97
SCN4AP35499 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SCN4AP35499 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN4AP35499 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.1■□□□□ 0.97
SCN4AP35499 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.1■□□□□ 0.97
SCN4AP35499 AP001059.3-201ENST00000619053 235 ntBASIC21.1■□□□□ 0.97
SCN4AP35499 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.1■□□□□ 0.97
SCN4AP35499 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.09■□□□□ 0.97
SCN4AP35499 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
SCN4AP35499 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.09■□□□□ 0.97
SCN4AP35499 LINC01006-201ENST00000333319 2292 ntBASIC21.09■□□□□ 0.97
SCN4AP35499 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC21.09■□□□□ 0.97
SCN4AP35499 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC21.09■□□□□ 0.97
SCN4AP35499 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.09■□□□□ 0.97
SCN4AP35499 DUX4L27-201ENST00000554796 1261 ntBASIC21.09■□□□□ 0.97
SCN4AP35499 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.09■□□□□ 0.97
SCN4AP35499 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.09■□□□□ 0.97
SCN4AP35499 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 AC006116.8-202ENST00000587620 1550 ntBASIC21.09■□□□□ 0.97
SCN4AP35499 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 SIRPAP1-201ENST00000448467 1770 ntBASIC21.09■□□□□ 0.97
SCN4AP35499 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SCN4AP35499 AC003669.1-201ENST00000334569 611 ntBASIC21.08■□□□□ 0.97
SCN4AP35499 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 TERF1P3-201ENST00000505638 1227 ntBASIC21.08■□□□□ 0.97
SCN4AP35499 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.08■□□□□ 0.97
SCN4AP35499 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SCN4AP35499 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN4AP35499 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN4AP35499 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.08■□□□□ 0.97
SCN4AP35499 AC008761.3-201ENST00000624803 892 ntBASIC21.08■□□□□ 0.97
SCN4AP35499 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN4AP35499 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
SCN4AP35499 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SCN4AP35499 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC21.08■□□□□ 0.97
SCN4AP35499 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SCN4AP35499 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SCN4AP35499 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
SCN4AP35499 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms