Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.89■■□□□ 1.09
COL4A1P02462 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A1P02462 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
COL4A1P02462 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A1P02462 MED29-202ENST00000594368 1471 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A1P02462 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL4A1P02462 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
COL4A1P02462 AC023274.1-201ENST00000418278 595 ntBASIC21.88■■□□□ 1.09
COL4A1P02462 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A1P02462 AC108751.1-201ENST00000490852 363 ntBASIC21.88■■□□□ 1.09
COL4A1P02462 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.88■■□□□ 1.09
COL4A1P02462 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC21.88■■□□□ 1.09
COL4A1P02462 AL022326.1-202ENST00000641533 845 ntBASIC21.88■■□□□ 1.09
COL4A1P02462 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 AC006504.4-201ENST00000592118 1568 ntBASIC21.88■■□□□ 1.09
COL4A1P02462 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.88■■□□□ 1.09
COL4A1P02462 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
COL4A1P02462 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC21.88■■□□□ 1.09
COL4A1P02462 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL4A1P02462 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.87■■□□□ 1.09
COL4A1P02462 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 RPS2P28-201ENST00000314255 741 ntBASIC21.87■■□□□ 1.09
COL4A1P02462 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC21.87■■□□□ 1.09
COL4A1P02462 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC21.87■■□□□ 1.09
COL4A1P02462 KLF4P1-201ENST00000412782 1185 ntBASIC21.87■■□□□ 1.09
COL4A1P02462 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC21.87■■□□□ 1.09
COL4A1P02462 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC21.87■■□□□ 1.09
COL4A1P02462 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.87■■□□□ 1.09
COL4A1P02462 AL049757.1-201ENST00000616842 1596 ntBASIC21.87■■□□□ 1.09
COL4A1P02462 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
COL4A1P02462 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL4A1P02462 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC21.86■■□□□ 1.09
COL4A1P02462 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
COL4A1P02462 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC21.86■■□□□ 1.09
COL4A1P02462 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.86■■□□□ 1.09
COL4A1P02462 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 AC064836.3-201ENST00000607928 673 ntBASIC21.86■■□□□ 1.09
COL4A1P02462 AL691403.2-201ENST00000618460 490 ntBASIC21.86■■□□□ 1.09
COL4A1P02462 AC135776.1-201ENST00000319817 2481 ntBASIC21.86■■□□□ 1.09
COL4A1P02462 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC21.86■■□□□ 1.09
COL4A1P02462 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC21.86■■□□□ 1.09
COL4A1P02462 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.86■■□□□ 1.09
COL4A1P02462 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC21.86■■□□□ 1.09
COL4A1P02462 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL4A1P02462 TBC1D3P5-201ENST00000579401 1545 ntBASIC21.85■■□□□ 1.09
COL4A1P02462 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 INIP-202ENST00000374236 874 ntTSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL4A1P02462 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.85■■□□□ 1.09
COL4A1P02462 AC108073.2-201ENST00000464002 357 ntBASIC21.85■■□□□ 1.09
COL4A1P02462 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.85■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms