Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.54■□□□□ 0.4
TNFP01375 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.54■□□□□ 0.4
TNFP01375 FAM220CP-201ENST00000395253 831 ntBASIC17.54■□□□□ 0.4
TNFP01375 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.54■□□□□ 0.4
TNFP01375 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.54■□□□□ 0.4
TNFP01375 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 ABCD1P5-201ENST00000445663 754 ntBASIC17.54■□□□□ 0.4
TNFP01375 SCARNA2-201ENST00000458748 420 ntBASIC17.54■□□□□ 0.4
TNFP01375 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.54■□□□□ 0.4
TNFP01375 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.54■□□□□ 0.4
TNFP01375 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.54■□□□□ 0.4
TNFP01375 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.54■□□□□ 0.4
TNFP01375 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.54■□□□□ 0.4
TNFP01375 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.54■□□□□ 0.4
TNFP01375 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
TNFP01375 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 HLA-A-201ENST00000376802 1334 ntBASIC17.53■□□□□ 0.4
TNFP01375 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.53■□□□□ 0.4
TNFP01375 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
TNFP01375 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.53■□□□□ 0.4
TNFP01375 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.53■□□□□ 0.4
TNFP01375 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.53■□□□□ 0.4
TNFP01375 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.53■□□□□ 0.4
TNFP01375 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.53■□□□□ 0.4
TNFP01375 AP001005.1-201ENST00000571755 1248 ntBASIC17.53■□□□□ 0.4
TNFP01375 AP001269.4-201ENST00000609611 512 ntBASIC17.53■□□□□ 0.4
TNFP01375 AL773604.1-201ENST00000617417 272 ntBASIC17.53■□□□□ 0.4
TNFP01375 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 AP005117.1-201ENST00000584346 1413 ntBASIC17.53■□□□□ 0.4
TNFP01375 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
TNFP01375 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
TNFP01375 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.53■□□□□ 0.4
TNFP01375 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TNFP01375 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.52■□□□□ 0.4
TNFP01375 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.52■□□□□ 0.4
TNFP01375 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
TNFP01375 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
TNFP01375 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.52■□□□□ 0.4
TNFP01375 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.52■□□□□ 0.4
TNFP01375 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
TNFP01375 KRT18P67-201ENST00000432816 1264 ntBASIC17.52■□□□□ 0.4
TNFP01375 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.52■□□□□ 0.4
TNFP01375 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC17.52■□□□□ 0.4
TNFP01375 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.52■□□□□ 0.4
TNFP01375 FGFR3P6-201ENST00000457012 610 ntBASIC17.52■□□□□ 0.4
TNFP01375 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.52■□□□□ 0.4
TNFP01375 AC073648.2-201ENST00000510116 352 ntBASIC17.52■□□□□ 0.4
TNFP01375 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
TNFP01375 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
TNFP01375 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TNFP01375 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.52■□□□□ 0.39
TNFP01375 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TNFP01375 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.52■□□□□ 0.39
TNFP01375 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.52■□□□□ 0.39
TNFP01375 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.52■□□□□ 0.39
TNFP01375 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
TNFP01375 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms