Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.24■□□□□ 0.51
USP1O94782 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.24■□□□□ 0.51
USP1O94782 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.24■□□□□ 0.51
USP1O94782 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC18.24■□□□□ 0.51
USP1O94782 MIR3917-201ENST00000580971 93 ntBASIC18.24■□□□□ 0.51
USP1O94782 AC092865.7-201ENST00000641832 219 ntBASIC18.24■□□□□ 0.51
USP1O94782 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC18.24■□□□□ 0.51
USP1O94782 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
USP1O94782 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
USP1O94782 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
USP1O94782 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 HTR7P1-202ENST00000624664 4411 ntBASIC18.23■□□□□ 0.51
USP1O94782 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
USP1O94782 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
USP1O94782 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 TNRC18P3-201ENST00000441896 2691 ntBASIC18.23■□□□□ 0.51
USP1O94782 AC012317.2-201ENST00000623305 2251 ntBASIC18.23■□□□□ 0.51
USP1O94782 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 LINC01568-207ENST00000641790 1380 ntBASIC18.23■□□□□ 0.51
USP1O94782 FAM210CP-201ENST00000445714 574 ntBASIC18.23■□□□□ 0.51
USP1O94782 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.23■□□□□ 0.51
USP1O94782 AC008687.5-201ENST00000593746 558 ntBASIC18.23■□□□□ 0.51
USP1O94782 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC18.23■□□□□ 0.51
USP1O94782 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.23■□□□□ 0.51
USP1O94782 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
USP1O94782 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
USP1O94782 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.23■□□□□ 0.51
USP1O94782 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
USP1O94782 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USP1O94782 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USP1O94782 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.22■□□□□ 0.51
USP1O94782 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC18.22■□□□□ 0.51
USP1O94782 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.22■□□□□ 0.51
USP1O94782 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.22■□□□□ 0.51
USP1O94782 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
USP1O94782 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.22■□□□□ 0.51
USP1O94782 AP000523.1-201ENST00000398242 1049 ntBASIC18.22■□□□□ 0.51
USP1O94782 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.22■□□□□ 0.51
USP1O94782 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC18.22■□□□□ 0.51
USP1O94782 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.22■□□□□ 0.51
USP1O94782 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 AC097493.4-201ENST00000641197 219 ntBASIC18.22■□□□□ 0.51
USP1O94782 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
USP1O94782 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.22■□□□□ 0.51
USP1O94782 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
USP1O94782 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.22■□□□□ 0.51
USP1O94782 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 AC132938.6-201ENST00000623828 1655 ntBASIC18.22■□□□□ 0.51
USP1O94782 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
USP1O94782 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
USP1O94782 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.21■□□□□ 0.51
USP1O94782 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
USP1O94782 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms