Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 BX276092.5-203ENST00000456199 560 ntBASIC16.95■□□□□ 0.3
LDB3O75112 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.95■□□□□ 0.3
LDB3O75112 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.95■□□□□ 0.3
LDB3O75112 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 KRT8P26-201ENST00000534154 1276 ntBASIC16.95■□□□□ 0.3
LDB3O75112 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
LDB3O75112 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.95■□□□□ 0.3
LDB3O75112 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LDB3O75112 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LDB3O75112 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
LDB3O75112 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB3O75112 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
LDB3O75112 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.94■□□□□ 0.3
LDB3O75112 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.94■□□□□ 0.3
LDB3O75112 AL121672.3-201ENST00000608644 468 ntBASIC16.94■□□□□ 0.3
LDB3O75112 GXYLT1P4-201ENST00000613576 1192 ntBASIC16.94■□□□□ 0.3
LDB3O75112 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.94■□□□□ 0.3
LDB3O75112 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC16.94■□□□□ 0.3
LDB3O75112 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 NOC2LP1-202ENST00000452600 2235 ntBASIC16.94■□□□□ 0.3
LDB3O75112 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
LDB3O75112 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LDB3O75112 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LDB3O75112 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB3O75112 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB3O75112 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 AC016734.2-201ENST00000624325 1377 ntBASIC16.93■□□□□ 0.3
LDB3O75112 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 FLJ13224-201ENST00000313737 1514 ntBASIC16.93■□□□□ 0.3
LDB3O75112 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.93■□□□□ 0.3
LDB3O75112 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.93■□□□□ 0.3
LDB3O75112 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
LDB3O75112 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
LDB3O75112 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
LDB3O75112 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
LDB3O75112 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
LDB3O75112 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
LDB3O75112 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms