Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
PROM1O43490 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PROM1O43490 LINC00602-201ENST00000629776 2065 ntBASIC17.11■□□□□ 0.33
PROM1O43490 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.1■□□□□ 0.33
PROM1O43490 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
PROM1O43490 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PROM1O43490 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
PROM1O43490 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 DUTP2-201ENST00000519164 463 ntBASIC17.1■□□□□ 0.33
PROM1O43490 VENTXP5-201ENST00000523979 775 ntBASIC17.1■□□□□ 0.33
PROM1O43490 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.1■□□□□ 0.33
PROM1O43490 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.1■□□□□ 0.33
PROM1O43490 FZD10-202ENST00000539839 3282 ntBASIC17.1■□□□□ 0.33
PROM1O43490 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.1■□□□□ 0.33
PROM1O43490 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
PROM1O43490 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
PROM1O43490 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.1■□□□□ 0.33
PROM1O43490 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PROM1O43490 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.09■□□□□ 0.33
PROM1O43490 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC17.09■□□□□ 0.33
PROM1O43490 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.09■□□□□ 0.33
PROM1O43490 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC17.09■□□□□ 0.33
PROM1O43490 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 AP003733.1-201ENST00000491725 852 ntBASIC17.09■□□□□ 0.33
PROM1O43490 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.09■□□□□ 0.33
PROM1O43490 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.09■□□□□ 0.33
PROM1O43490 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.09■□□□□ 0.33
PROM1O43490 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PROM1O43490 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
PROM1O43490 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.09■□□□□ 0.33
PROM1O43490 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PROM1O43490 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.09■□□□□ 0.33
PROM1O43490 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.09■□□□□ 0.33
PROM1O43490 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PROM1O43490 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PROM1O43490 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.08■□□□□ 0.33
PROM1O43490 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.08■□□□□ 0.33
PROM1O43490 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PROM1O43490 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.08■□□□□ 0.33
PROM1O43490 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PROM1O43490 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
PROM1O43490 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
PROM1O43490 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.08■□□□□ 0.33
PROM1O43490 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.08■□□□□ 0.32
PROM1O43490 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
PROM1O43490 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 IGHGP-201ENST00000390555 1178 ntBASIC17.08■□□□□ 0.32
PROM1O43490 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PROM1O43490 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms