Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
HOXC11O43248 AF228730.7-201ENST00000641842 219 ntBASIC18.28■□□□□ 0.52
HOXC11O43248 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC11O43248 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC11O43248 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC11O43248 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC11O43248 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC11O43248 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HOXC11O43248 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.27■□□□□ 0.52
HOXC11O43248 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
HOXC11O43248 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HOXC11O43248 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
HOXC11O43248 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HOXC11O43248 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HOXC11O43248 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HOXC11O43248 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.27■□□□□ 0.52
HOXC11O43248 PMS2P1-201ENST00000431037 1228 ntBASIC18.27■□□□□ 0.52
HOXC11O43248 AC122714.2-201ENST00000502787 707 ntBASIC18.27■□□□□ 0.52
HOXC11O43248 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.27■□□□□ 0.52
HOXC11O43248 SLC25A1P1-201ENST00000528351 927 ntBASIC18.27■□□□□ 0.52
HOXC11O43248 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.27■□□□□ 0.52
HOXC11O43248 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
HOXC11O43248 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.27■□□□□ 0.52
HOXC11O43248 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.27■□□□□ 0.52
HOXC11O43248 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HOXC11O43248 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.51
HOXC11O43248 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC11O43248 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.51
HOXC11O43248 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC18.27■□□□□ 0.51
HOXC11O43248 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
HOXC11O43248 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HOXC11O43248 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC11O43248 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
HOXC11O43248 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HOXC11O43248 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HOXC11O43248 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC11O43248 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC11O43248 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC18.26■□□□□ 0.51
HOXC11O43248 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
HOXC11O43248 AC023511.2-201ENST00000618803 211 ntBASIC18.26■□□□□ 0.51
HOXC11O43248 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
HOXC11O43248 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HOXC11O43248 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
HOXC11O43248 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.26■□□□□ 0.51
HOXC11O43248 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
HOXC11O43248 AC010460.3-201ENST00000511359 1579 ntBASIC18.25■□□□□ 0.51
HOXC11O43248 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
HOXC11O43248 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.25■□□□□ 0.51
HOXC11O43248 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC18.25■□□□□ 0.51
HOXC11O43248 COX5A-202ENST00000562233 441 ntTSL 3 BASIC18.25■□□□□ 0.51
HOXC11O43248 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 AC025062.2-201ENST00000605477 670 ntBASIC18.25■□□□□ 0.51
HOXC11O43248 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC18.25■□□□□ 0.51
HOXC11O43248 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
HOXC11O43248 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
HOXC11O43248 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms