Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HERPUD2Q9BSE4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 ATP5G1P1-201ENST00000448724 379 ntBASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 AC010203.1-204ENST00000548782 407 ntBASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 AL023973.1-201ENST00000624619 620 ntBASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
HERPUD2Q9BSE4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 MIR1224-201ENST00000408193 85 ntBASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
HERPUD2Q9BSE4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
HERPUD2Q9BSE4 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms