Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 AC116562.4-202ENST00000641738 218 ntBASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM56Q9BRZ2 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 GNAS-203ENST00000306120 1878 ntBASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 TSPY14P-201ENST00000303979 915 ntBASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 AC112497.1-201ENST00000624824 639 ntBASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 AC012313.1-201ENST00000593393 3059 ntBASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
TRIM56Q9BRZ2 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 PP12613-201ENST00000424958 2230 ntBASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 AC211429.1-201ENST00000415277 523 ntBASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 ECEL1P3-201ENST00000427961 737 ntBASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 C2orf69P3-201ENST00000565542 1120 ntBASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.4■□□□□ 0.54
TRIM56Q9BRZ2 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM56Q9BRZ2 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
TRIM56Q9BRZ2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM56Q9BRZ2 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
TRIM56Q9BRZ2 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ECEL1P2-202ENST00000465689 757 ntBASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.39■□□□□ 0.53
TRIM56Q9BRZ2 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms