Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AC233702.5-201ENST00000584107 538 ntBASIC15.76■□□□□ 0.11
NKX3-1Q99801 AL049637.2-201ENST00000641778 930 ntBASIC15.76■□□□□ 0.11
NKX3-1Q99801 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
NKX3-1Q99801 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC15.76■□□□□ 0.11
NKX3-1Q99801 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
NKX3-1Q99801 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC15.75■□□□□ 0.11
NKX3-1Q99801 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC022211.2-201ENST00000585075 2527 ntBASIC15.74■□□□□ 0.11
NKX3-1Q99801 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 SRI-203ENST00000419179 1307 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC097488.1-201ENST00000507834 756 ntBASIC15.74■□□□□ 0.11
NKX3-1Q99801 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 LINC01126-201ENST00000623515 1646 ntBASIC15.74■□□□□ 0.11
NKX3-1Q99801 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
NKX3-1Q99801 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
NKX3-1Q99801 AC096733.2-201ENST00000609937 1394 ntBASIC15.74■□□□□ 0.11
NKX3-1Q99801 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms