Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
CLIP3Q96DZ5 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 AP000867.3-201ENST00000524675 377 ntBASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 TEN1-204ENST00000588202 862 ntTSL 3 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 AC099343.3-201ENST00000605834 2503 ntBASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
CLIP3Q96DZ5 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
CLIP3Q96DZ5 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 AL513477.1-201ENST00000602865 2407 ntBASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 IGHGP-201ENST00000390555 1178 ntBASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 TPM4P1-201ENST00000436100 807 ntBASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
CLIP3Q96DZ5 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 TOB2P1-201ENST00000469761 992 ntBASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 GUSBP12-201ENST00000513727 720 ntBASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 TPSP2-201ENST00000561760 610 ntBASIC17.38■□□□□ 0.37
CLIP3Q96DZ5 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms