Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SKA1Q96BD8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.51■□□□□ 0.55
SKA1Q96BD8 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 SDHD-206ENST00000528182 754 ntTSL 3 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AL136038.4-201ENST00000603606 1261 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AC134043.2-201ENST00000624206 2238 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SKA1Q96BD8 AL109659.2-201ENST00000606809 1674 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 AC012313.1-201ENST00000593393 3059 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
SKA1Q96BD8 GNAS-203ENST00000306120 1878 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.5■□□□□ 0.55
SKA1Q96BD8 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 AC111152.3-201ENST00000569699 673 ntBASIC18.49■□□□□ 0.55
SKA1Q96BD8 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC18.49■□□□□ 0.55
SKA1Q96BD8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SKA1Q96BD8 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SKA1Q96BD8 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SKA1Q96BD8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.48■□□□□ 0.55
SKA1Q96BD8 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SKA1Q96BD8 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA1Q96BD8 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.48■□□□□ 0.55
SKA1Q96BD8 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms