Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
BRF1Q92994 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRF1Q92994 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC21.24■□□□□ 0.99
BRF1Q92994 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF1Q92994 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
BRF1Q92994 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF1Q92994 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
BRF1Q92994 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
BRF1Q92994 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
BRF1Q92994 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
BRF1Q92994 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.23■□□□□ 0.99
BRF1Q92994 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 KRT18P48-201ENST00000434763 852 ntBASIC21.23■□□□□ 0.99
BRF1Q92994 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.23■□□□□ 0.99
BRF1Q92994 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.23■□□□□ 0.99
BRF1Q92994 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC21.23■□□□□ 0.99
BRF1Q92994 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC21.23■□□□□ 0.99
BRF1Q92994 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
BRF1Q92994 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
BRF1Q92994 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 LINC01311-201ENST00000565162 1445 ntBASIC21.22■□□□□ 0.99
BRF1Q92994 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 AC004263.2-201ENST00000617183 678 ntBASIC21.22■□□□□ 0.99
BRF1Q92994 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
BRF1Q92994 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.22■□□□□ 0.99
BRF1Q92994 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
BRF1Q92994 GNE-204ENST00000539208 2190 ntTSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 MIR662-201ENST00000384847 95 ntBASIC21.21■□□□□ 0.99
BRF1Q92994 SPDYE13P-201ENST00000445314 798 ntBASIC21.21■□□□□ 0.99
BRF1Q92994 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC21.21■□□□□ 0.99
BRF1Q92994 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.21■□□□□ 0.99
BRF1Q92994 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.21■□□□□ 0.99
BRF1Q92994 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC21.21■□□□□ 0.99
BRF1Q92994 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 GNAS-203ENST00000306120 1878 ntBASIC21.21■□□□□ 0.99
BRF1Q92994 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC21.21■□□□□ 0.99
BRF1Q92994 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
BRF1Q92994 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
BRF1Q92994 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
BRF1Q92994 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
BRF1Q92994 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
BRF1Q92994 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
BRF1Q92994 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
BRF1Q92994 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms