Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 DKFZP434A062-201ENST00000573103 5021 ntBASIC11.25□□□□□ -0.61
LINC00643Q86TS7 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
LINC00643Q86TS7 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 AL499627.1-201ENST00000569373 2188 ntBASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 CICP4-201ENST00000447359 2812 ntBASIC11.24□□□□□ -0.61
LINC00643Q86TS7 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 AL031963.3-201ENST00000606441 850 ntBASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
LINC00643Q86TS7 AC005224.4-201ENST00000583262 1652 ntBASIC11.24□□□□□ -0.61
LINC00643Q86TS7 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC11.23□□□□□ -0.61
LINC00643Q86TS7 FES-204ENST00000414248 2327 ntTSL 2 BASIC11.23□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms