Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMK1P53667 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMK1P53667 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMK1P53667 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMK1P53667 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.79■□□□□ 0.44
LIMK1P53667 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
LIMK1P53667 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC17.79■□□□□ 0.44
LIMK1P53667 AC025062.2-201ENST00000605477 670 ntBASIC17.79■□□□□ 0.44
LIMK1P53667 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.79■□□□□ 0.44
LIMK1P53667 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LIMK1P53667 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIMK1P53667 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIMK1P53667 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
LIMK1P53667 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMK1P53667 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMK1P53667 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMK1P53667 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
LIMK1P53667 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.78■□□□□ 0.44
LIMK1P53667 AC113404.2-201ENST00000507884 177 ntBASIC17.78■□□□□ 0.44
LIMK1P53667 YBX1P5-201ENST00000509441 847 ntBASIC17.78■□□□□ 0.44
LIMK1P53667 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMK1P53667 AC008687.5-201ENST00000593746 558 ntBASIC17.78■□□□□ 0.44
LIMK1P53667 AC011467.2-201ENST00000598425 242 ntBASIC17.78■□□□□ 0.44
LIMK1P53667 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.78■□□□□ 0.44
LIMK1P53667 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.78■□□□□ 0.44
LIMK1P53667 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.78■□□□□ 0.44
LIMK1P53667 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
LIMK1P53667 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIMK1P53667 AC005332.8-201ENST00000622750 2735 ntBASIC17.78■□□□□ 0.44
LIMK1P53667 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIMK1P53667 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
LIMK1P53667 AC254562.1-201ENST00000417586 456 ntBASIC17.77■□□□□ 0.44
LIMK1P53667 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMK1P53667 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMK1P53667 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMK1P53667 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.77■□□□□ 0.44
LIMK1P53667 SNHG9-202ENST00000564014 471 ntBASIC17.77■□□□□ 0.44
LIMK1P53667 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.77■□□□□ 0.44
LIMK1P53667 AL596442.2-201ENST00000610240 980 ntBASIC17.77■□□□□ 0.44
LIMK1P53667 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.77■□□□□ 0.44
LIMK1P53667 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMK1P53667 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMK1P53667 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.77■□□□□ 0.43
LIMK1P53667 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.77■□□□□ 0.43
LIMK1P53667 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMK1P53667 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMK1P53667 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.77■□□□□ 0.43
LIMK1P53667 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIMK1P53667 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMK1P53667 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIMK1P53667 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMK1P53667 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.76■□□□□ 0.43
LIMK1P53667 MCCD1P2-201ENST00000423228 335 ntBASIC17.76■□□□□ 0.43
LIMK1P53667 AL645939.2-201ENST00000427340 991 ntBASIC17.76■□□□□ 0.43
LIMK1P53667 AC007967.2-201ENST00000432613 625 ntBASIC17.76■□□□□ 0.43
LIMK1P53667 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIMK1P53667 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.76■□□□□ 0.43
LIMK1P53667 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.76■□□□□ 0.43
LIMK1P53667 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC17.76■□□□□ 0.43
LIMK1P53667 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms