Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AL499627.1-201ENST00000569373 2188 ntBASIC15□□□□□ -0.01
HOXA1P49639 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 AC239809.2-201ENST00000415381 517 ntBASIC15□□□□□ -0.01
HOXA1P49639 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 MTMR9LP-203ENST00000426597 1545 ntBASIC15□□□□□ -0.01
HOXA1P49639 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
HOXA1P49639 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HOXA1P49639 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HOXA1P49639 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXA1P49639 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXA1P49639 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXA1P49639 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXA1P49639 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXA1P49639 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC14.99□□□□□ -0.01
HOXA1P49639 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.99□□□□□ -0.01
HOXA1P49639 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.99□□□□□ -0.01
HOXA1P49639 AP003097.1-201ENST00000530657 1135 ntBASIC14.99□□□□□ -0.01
HOXA1P49639 AC069544.1-201ENST00000609399 999 ntBASIC14.99□□□□□ -0.01
HOXA1P49639 AC092666.2-201ENST00000613287 246 ntBASIC14.99□□□□□ -0.01
HOXA1P49639 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
HOXA1P49639 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC14.99□□□□□ -0.01
HOXA1P49639 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
HOXA1P49639 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
HOXA1P49639 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.99□□□□□ -0.01
HOXA1P49639 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
HOXA1P49639 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.98□□□□□ -0.01
HOXA1P49639 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 UBALD1-205ENST00000590891 2641 ntBASIC14.98□□□□□ -0.01
HOXA1P49639 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 PCDHB19P-201ENST00000570871 2371 ntBASIC14.98□□□□□ -0.01
HOXA1P49639 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.98□□□□□ -0.01
HOXA1P49639 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC14.98□□□□□ -0.01
HOXA1P49639 AC104771.1-201ENST00000603335 964 ntBASIC14.98□□□□□ -0.01
HOXA1P49639 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 AC068587.9-201ENST00000641814 219 ntBASIC14.98□□□□□ -0.01
HOXA1P49639 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC14.98□□□□□ -0.01
HOXA1P49639 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC14.98□□□□□ -0.01
HOXA1P49639 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HOXA1P49639 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
HOXA1P49639 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms