Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 IGHV3-65-201ENST00000523210 341 ntBASIC22.57■■□□□ 1.2
COL5A3P25940 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC22.57■■□□□ 1.2
COL5A3P25940 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC22.57■■□□□ 1.2
COL5A3P25940 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC22.57■■□□□ 1.2
COL5A3P25940 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 PHGDH-209ENST00000641074 1780 ntBASIC22.57■■□□□ 1.2
COL5A3P25940 GID4-202ENST00000376345 1391 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC22.57■■□□□ 1.2
COL5A3P25940 GOLGA6L17P-202ENST00000614358 1398 ntBASIC22.57■■□□□ 1.2
COL5A3P25940 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC22.57■■□□□ 1.2
COL5A3P25940 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC22.57■■□□□ 1.2
COL5A3P25940 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 PON3-205ENST00000451904 1053 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 MAL2-202ENST00000531508 892 ntTSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC22.57■■□□□ 1.2
COL5A3P25940 SPCS2P1-201ENST00000561636 679 ntBASIC22.57■■□□□ 1.2
COL5A3P25940 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC22.57■■□□□ 1.2
COL5A3P25940 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.57■■□□□ 1.2
COL5A3P25940 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
COL5A3P25940 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC22.56■■□□□ 1.2
COL5A3P25940 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC22.56■■□□□ 1.2
COL5A3P25940 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.56■■□□□ 1.2
COL5A3P25940 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
COL5A3P25940 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 SP100-208ENST00000427101 1922 ntTSL 2 BASIC22.56■■□□□ 1.2
COL5A3P25940 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 MRPL20P1-201ENST00000400819 433 ntBASIC22.56■■□□□ 1.2
COL5A3P25940 TSEN15P1-201ENST00000423257 515 ntBASIC22.56■■□□□ 1.2
COL5A3P25940 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC22.56■■□□□ 1.2
COL5A3P25940 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC22.56■■□□□ 1.2
COL5A3P25940 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC22.56■■□□□ 1.2
COL5A3P25940 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
COL5A3P25940 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC22.56■■□□□ 1.2
COL5A3P25940 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC22.55■■□□□ 1.2
COL5A3P25940 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.55■■□□□ 1.2
COL5A3P25940 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
COL5A3P25940 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.55■■□□□ 1.2
COL5A3P25940 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC22.55■■□□□ 1.2
COL5A3P25940 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
COL5A3P25940 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC22.55■■□□□ 1.2
COL5A3P25940 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC22.55■■□□□ 1.2
COL5A3P25940 KRT18P28-201ENST00000453838 1332 ntBASIC22.55■■□□□ 1.2
COL5A3P25940 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
COL5A3P25940 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC22.55■■□□□ 1.2
COL5A3P25940 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC22.54■■□□□ 1.2
COL5A3P25940 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC22.54■■□□□ 1.2
COL5A3P25940 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC22.54■■□□□ 1.2
COL5A3P25940 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC22.54■■□□□ 1.2
COL5A3P25940 AL031598.1-201ENST00000561511 1773 ntBASIC22.54■■□□□ 1.2
COL5A3P25940 AC126763.1-201ENST00000552015 2118 ntBASIC22.54■■□□□ 1.2
COL5A3P25940 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
COL5A3P25940 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 CD82-202ENST00000342935 967 ntTSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
COL5A3P25940 CD63-210ENST00000550776 870 ntTSL 5 BASIC22.54■■□□□ 1.2
COL5A3P25940 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC22.54■■□□□ 1.2
COL5A3P25940 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL5A3P25940 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC22.53■■□□□ 1.2
COL5A3P25940 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC22.53■■□□□ 1.2
COL5A3P25940 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL5A3P25940 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL5A3P25940 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
COL5A3P25940 AC003669.1-201ENST00000334569 611 ntBASIC22.53■■□□□ 1.2
COL5A3P25940 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC22.53■■□□□ 1.2
COL5A3P25940 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC22.53■■□□□ 1.2
COL5A3P25940 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms