Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
BDNFP23560 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.98■□□□□ 0.63
BDNFP23560 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.98■□□□□ 0.63
BDNFP23560 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
BDNFP23560 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
BDNFP23560 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
BDNFP23560 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
BDNFP23560 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.98■□□□□ 0.63
BDNFP23560 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
BDNFP23560 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 POM121L3P-201ENST00000419331 1163 ntBASIC18.97■□□□□ 0.63
BDNFP23560 KRT16P4-201ENST00000453883 522 ntBASIC18.97■□□□□ 0.63
BDNFP23560 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC18.97■□□□□ 0.63
BDNFP23560 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.97■□□□□ 0.63
BDNFP23560 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
BDNFP23560 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
BDNFP23560 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.97■□□□□ 0.63
BDNFP23560 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC18.96■□□□□ 0.63
BDNFP23560 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
BDNFP23560 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
BDNFP23560 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.96■□□□□ 0.63
BDNFP23560 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 EMBP1-201ENST00000458200 901 ntBASIC18.96■□□□□ 0.63
BDNFP23560 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.96■□□□□ 0.63
BDNFP23560 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 LINC01711-201ENST00000598340 967 ntBASIC18.96■□□□□ 0.63
BDNFP23560 REXO1L9P-201ENST00000604264 2108 ntBASIC18.96■□□□□ 0.63
BDNFP23560 AL138831.2-201ENST00000606564 490 ntBASIC18.96■□□□□ 0.63
BDNFP23560 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.96■□□□□ 0.63
BDNFP23560 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.96■□□□□ 0.63
BDNFP23560 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
BDNFP23560 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
BDNFP23560 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 AC125634.1-201ENST00000438758 1403 ntBASIC18.95■□□□□ 0.62
BDNFP23560 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.95■□□□□ 0.62
BDNFP23560 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
BDNFP23560 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms