Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC15.3■□□□□ 0.04
USF1P22415 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.3■□□□□ 0.04
USF1P22415 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.3■□□□□ 0.04
USF1P22415 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.3■□□□□ 0.04
USF1P22415 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
USF1P22415 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
USF1P22415 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC15.29■□□□□ 0.04
USF1P22415 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USF1P22415 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.29■□□□□ 0.04
USF1P22415 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
USF1P22415 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
USF1P22415 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.29■□□□□ 0.04
USF1P22415 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.29■□□□□ 0.04
USF1P22415 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
USF1P22415 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC15.29■□□□□ 0.04
USF1P22415 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
USF1P22415 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC15.28■□□□□ 0.04
USF1P22415 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
USF1P22415 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
USF1P22415 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC15.28■□□□□ 0.04
USF1P22415 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.28■□□□□ 0.04
USF1P22415 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC15.28■□□□□ 0.04
USF1P22415 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 NUS1P2-201ENST00000417358 873 ntBASIC15.28■□□□□ 0.04
USF1P22415 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC15.28■□□□□ 0.04
USF1P22415 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.28■□□□□ 0.04
USF1P22415 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 SLC25A6P4-201ENST00000586535 553 ntBASIC15.28■□□□□ 0.04
USF1P22415 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.28■□□□□ 0.04
USF1P22415 AC064862.7-201ENST00000604520 867 ntBASIC15.28■□□□□ 0.04
USF1P22415 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.28■□□□□ 0.04
USF1P22415 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.28■□□□□ 0.04
USF1P22415 CCNC-219ENST00000627680 896 ntTSL 5 BASIC15.28■□□□□ 0.04
USF1P22415 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC15.28■□□□□ 0.04
USF1P22415 AL031598.1-201ENST00000561511 1773 ntBASIC15.28■□□□□ 0.04
USF1P22415 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.28■□□□□ 0.04
USF1P22415 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
USF1P22415 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
USF1P22415 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC15.27■□□□□ 0.04
USF1P22415 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
USF1P22415 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
USF1P22415 AP000593.1-201ENST00000393668 712 ntBASIC15.27■□□□□ 0.04
USF1P22415 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.27■□□□□ 0.04
USF1P22415 SAPCD2P3-201ENST00000455031 850 ntBASIC15.27■□□□□ 0.04
USF1P22415 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC15.27■□□□□ 0.04
USF1P22415 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.27■□□□□ 0.04
USF1P22415 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
USF1P22415 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC15.27■□□□□ 0.04
USF1P22415 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
USF1P22415 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
USF1P22415 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
USF1P22415 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.27■□□□□ 0.03
USF1P22415 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
USF1P22415 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms