Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC3P19447 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC3P19447 AF186996.4-201ENST00000467186 377 ntBASIC20.84■□□□□ 0.93
ERCC3P19447 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC20.84■□□□□ 0.93
ERCC3P19447 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 SLC25A1P1-201ENST00000528351 927 ntBASIC20.84■□□□□ 0.93
ERCC3P19447 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.84■□□□□ 0.93
ERCC3P19447 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC3P19447 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
ERCC3P19447 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
ERCC3P19447 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.84■□□□□ 0.93
ERCC3P19447 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
ERCC3P19447 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.83■□□□□ 0.93
ERCC3P19447 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
ERCC3P19447 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
ERCC3P19447 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC3P19447 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 MIR574-201ENST00000385209 96 ntBASIC20.83■□□□□ 0.93
ERCC3P19447 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
ERCC3P19447 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC20.83■□□□□ 0.93
ERCC3P19447 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
ERCC3P19447 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.83■□□□□ 0.93
ERCC3P19447 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.83■□□□□ 0.93
ERCC3P19447 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
ERCC3P19447 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
ERCC3P19447 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC20.83■□□□□ 0.92
ERCC3P19447 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC3P19447 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC3P19447 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.83■□□□□ 0.92
ERCC3P19447 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC3P19447 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC3P19447 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
ERCC3P19447 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
ERCC3P19447 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
ERCC3P19447 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 AC112777.1-201ENST00000540175 1423 ntBASIC20.82■□□□□ 0.92
ERCC3P19447 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.82■□□□□ 0.92
ERCC3P19447 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
ERCC3P19447 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.82■□□□□ 0.92
ERCC3P19447 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
ERCC3P19447 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
ERCC3P19447 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
ERCC3P19447 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms