Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 MYLKP1-201ENST00000509077 1580 ntBASIC13.59□□□□□ -0.23
HLA-DQA1P01909 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 SNCG-201ENST00000348795 684 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 AC026185.1-201ENST00000445748 174 ntBASIC13.59□□□□□ -0.23
HLA-DQA1P01909 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 CYP2T3P-201ENST00000601990 817 ntBASIC13.59□□□□□ -0.23
HLA-DQA1P01909 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 AC106886.4-201ENST00000623557 2502 ntBASIC13.59□□□□□ -0.23
HLA-DQA1P01909 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
HLA-DQA1P01909 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
HLA-DQA1P01909 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 AC103702.1-201ENST00000548801 2630 ntBASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 FLJ38576-201ENST00000623820 2459 ntBASIC13.58□□□□□ -0.24
HLA-DQA1P01909 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 GMCL1P1-201ENST00000463439 1581 ntBASIC13.58□□□□□ -0.24
HLA-DQA1P01909 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC13.58□□□□□ -0.24
HLA-DQA1P01909 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC13.57□□□□□ -0.24
HLA-DQA1P01909 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms