Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.47■□□□□ 0.39
CLDN9O95484 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.47■□□□□ 0.39
CLDN9O95484 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CLDN9O95484 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.46■□□□□ 0.39
CLDN9O95484 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 AC010203.1-204ENST00000548782 407 ntBASIC17.46■□□□□ 0.39
CLDN9O95484 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CLDN9O95484 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
CLDN9O95484 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CLDN9O95484 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
CLDN9O95484 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CLDN9O95484 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.38
CLDN9O95484 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLDN9O95484 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.38
CLDN9O95484 AC022898.2-201ENST00000616822 1312 ntBASIC17.46■□□□□ 0.38
CLDN9O95484 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.45■□□□□ 0.38
CLDN9O95484 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.45■□□□□ 0.38
CLDN9O95484 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CLDN9O95484 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC17.45■□□□□ 0.38
CLDN9O95484 COX11P1-201ENST00000489116 835 ntBASIC17.45■□□□□ 0.38
CLDN9O95484 AC073912.3-201ENST00000624414 853 ntBASIC17.45■□□□□ 0.38
CLDN9O95484 AC133561.5-201ENST00000635547 218 ntBASIC17.45■□□□□ 0.38
CLDN9O95484 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.45■□□□□ 0.38
CLDN9O95484 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 LINC00167-201ENST00000530583 1419 ntBASIC17.45■□□□□ 0.38
CLDN9O95484 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CLDN9O95484 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CLDN9O95484 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.44■□□□□ 0.38
CLDN9O95484 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.44■□□□□ 0.38
CLDN9O95484 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CLDN9O95484 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.44■□□□□ 0.38
CLDN9O95484 RASA4DP-201ENST00000460726 1199 ntBASIC17.44■□□□□ 0.38
CLDN9O95484 AC113404.2-201ENST00000507884 177 ntBASIC17.44■□□□□ 0.38
CLDN9O95484 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
CLDN9O95484 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.44■□□□□ 0.38
CLDN9O95484 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CLDN9O95484 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
CLDN9O95484 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CLDN9O95484 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms