Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 AC106820.2-201ENST00000563775 3264 ntBASIC17.77■□□□□ 0.43
TRIM13O60858 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM13O60858 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM13O60858 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.77■□□□□ 0.43
TRIM13O60858 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM13O60858 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
TRIM13O60858 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 SLC25A1P2-201ENST00000430693 912 ntBASIC17.76■□□□□ 0.43
TRIM13O60858 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM13O60858 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.76■□□□□ 0.43
TRIM13O60858 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.76■□□□□ 0.43
TRIM13O60858 AC113410.3-201ENST00000623366 203 ntBASIC17.76■□□□□ 0.43
TRIM13O60858 AC112497.1-201ENST00000624824 639 ntBASIC17.76■□□□□ 0.43
TRIM13O60858 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
TRIM13O60858 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM13O60858 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC17.76■□□□□ 0.43
TRIM13O60858 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
TRIM13O60858 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.76■□□□□ 0.43
TRIM13O60858 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
TRIM13O60858 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM13O60858 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.75■□□□□ 0.43
TRIM13O60858 AL138688.1-201ENST00000624851 1594 ntBASIC17.75■□□□□ 0.43
TRIM13O60858 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 AC133963.1-201ENST00000504166 1679 ntBASIC17.75■□□□□ 0.43
TRIM13O60858 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 AL355355.2-201ENST00000442321 338 ntBASIC17.75■□□□□ 0.43
TRIM13O60858 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC17.75■□□□□ 0.43
TRIM13O60858 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 ITM2C-210ENST00000620962 501 ntBASIC17.75■□□□□ 0.43
TRIM13O60858 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
TRIM13O60858 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.75■□□□□ 0.43
TRIM13O60858 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM13O60858 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
TRIM13O60858 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRIM13O60858 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.74■□□□□ 0.43
TRIM13O60858 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 FAM201B-201ENST00000458407 597 ntBASIC17.74■□□□□ 0.43
TRIM13O60858 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM13O60858 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.74■□□□□ 0.43
TRIM13O60858 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
TRIM13O60858 AC099398.1-201ENST00000567919 2776 ntBASIC17.74■□□□□ 0.43
TRIM13O60858 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 AP001094.4-201ENST00000579008 2176 ntBASIC17.74■□□□□ 0.43
TRIM13O60858 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 AD000864.1-201ENST00000624076 2295 ntBASIC17.74■□□□□ 0.43
TRIM13O60858 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
TRIM13O60858 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms