Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 RPS15P9-201ENST00000494093 319 ntBASIC17.29■□□□□ 0.36
CDX4O14627 AP000344.2-201ENST00000512987 629 ntBASIC17.29■□□□□ 0.36
CDX4O14627 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CDX4O14627 PDPK2P-202ENST00000562415 1191 ntBASIC17.29■□□□□ 0.36
CDX4O14627 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
CDX4O14627 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CDX4O14627 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.29■□□□□ 0.36
CDX4O14627 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CDX4O14627 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CDX4O14627 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDX4O14627 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CDX4O14627 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CDX4O14627 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
CDX4O14627 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX4O14627 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX4O14627 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
CDX4O14627 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX4O14627 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX4O14627 AL020989.1-201ENST00000422979 469 ntBASIC17.28■□□□□ 0.36
CDX4O14627 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.28■□□□□ 0.36
CDX4O14627 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX4O14627 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
CDX4O14627 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.28■□□□□ 0.36
CDX4O14627 AC004877.2-201ENST00000623941 599 ntBASIC17.28■□□□□ 0.36
CDX4O14627 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.28■□□□□ 0.36
CDX4O14627 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDX4O14627 AL161938.1-201ENST00000569833 2180 ntBASIC17.28■□□□□ 0.36
CDX4O14627 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CDX4O14627 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 ME2-218ENST00000640965 2476 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX4O14627 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CDX4O14627 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 AC103564.2-201ENST00000432853 1299 ntBASIC17.27■□□□□ 0.36
CDX4O14627 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 HLA-J-203ENST00000494367 1087 ntBASIC17.27■□□□□ 0.36
CDX4O14627 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX4O14627 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX4O14627 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.27■□□□□ 0.36
CDX4O14627 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.27■□□□□ 0.36
CDX4O14627 AC093512.1-201ENST00000617969 520 ntBASIC17.27■□□□□ 0.36
CDX4O14627 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDX4O14627 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.27■□□□□ 0.36
CDX4O14627 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX4O14627 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDX4O14627 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX4O14627 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX4O14627 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.27■□□□□ 0.35
CDX4O14627 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDX4O14627 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CDX4O14627 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.26■□□□□ 0.35
CDX4O14627 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 AC132938.6-201ENST00000623828 1655 ntBASIC17.26■□□□□ 0.35
CDX4O14627 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC17.26■□□□□ 0.35
CDX4O14627 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.26■□□□□ 0.35
CDX4O14627 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 AL049812.1-201ENST00000432563 2267 ntBASIC17.26■□□□□ 0.35
CDX4O14627 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.26■□□□□ 0.35
CDX4O14627 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
CDX4O14627 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
CDX4O14627 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 CD99-202ENST00000381180 530 ntTSL 2 BASIC17.26■□□□□ 0.35
CDX4O14627 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX4O14627 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms