Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AL024508.2-201ENST00000607749 1894 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 METTL26-204ENST00000397665 558 ntTSL 2 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AC108073.2-201ENST00000464002 357 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 MIR4751-201ENST00000578027 74 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 Z92544.3-201ENST00000624747 417 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AF228730.6-201ENST00000641497 218 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AC084121.3-201ENST00000641716 218 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 AC105233.6-201ENST00000642093 218 ntBASIC21.76■■□□□ 1.07
ZC3H4Q9UPT8 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 AC005034.1-201ENST00000426657 489 ntBASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.75■■□□□ 1.07
ZC3H4Q9UPT8 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 UROS-202ENST00000368778 1556 ntTSL 2 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AC099778.1-201ENST00000568593 1911 ntBASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 CD63-210ENST00000550776 870 ntTSL 5 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AC004835.2-201ENST00000603762 682 ntBASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AJ011932.1-201ENST00000621707 465 ntBASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
ZC3H4Q9UPT8 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 AC004706.3-202ENST00000621574 984 ntBASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 AL513210.1-201ENST00000629608 234 ntBASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
ZC3H4Q9UPT8 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
ZC3H4Q9UPT8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms