Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC34.15■■■■□ 3.06
SHROOM4Q9ULL8 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 AC002310.6-201ENST00000624451 1377 ntBASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC34.14■■■■□ 3.06
SHROOM4Q9ULL8 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 KRT18P27-201ENST00000427733 1299 ntBASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC34.13■■■■□ 3.05
SHROOM4Q9ULL8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.12■■■■□ 3.05
SHROOM4Q9ULL8 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC34.11■■■■□ 3.05
SHROOM4Q9ULL8 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 AP002414.3-201ENST00000589352 1468 ntBASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC34.1■■■■□ 3.05
SHROOM4Q9ULL8 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 COX5A-206ENST00000568783 571 ntTSL 3 BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC34.09■■■■□ 3.05
SHROOM4Q9ULL8 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 CTNS-203ENST00000399306 803 ntTSL 3 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 AC008687.5-201ENST00000593746 558 ntBASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 AL031598.1-201ENST00000561511 1773 ntBASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC34.08■■■■□ 3.05
SHROOM4Q9ULL8 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms