Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 OR7E14P-202ENST00000530490 1290 ntBASIC21.22■□□□□ 0.99
DDX4Q9NQI0 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
DDX4Q9NQI0 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 CYGB-205ENST00000590175 830 ntTSL 3 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 MTDHP4-201ENST00000600287 670 ntBASIC21.21■□□□□ 0.99
DDX4Q9NQI0 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 WIZP1-201ENST00000531444 2299 ntBASIC21.21■□□□□ 0.99
DDX4Q9NQI0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.21■□□□□ 0.99
DDX4Q9NQI0 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.2■□□□□ 0.99
DDX4Q9NQI0 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
DDX4Q9NQI0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 PMPCAP1-201ENST00000508114 1576 ntBASIC21.2■□□□□ 0.98
DDX4Q9NQI0 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 BX005266.1-201ENST00000473402 457 ntBASIC21.2■□□□□ 0.98
DDX4Q9NQI0 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC21.2■□□□□ 0.98
DDX4Q9NQI0 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 RPS2P28-201ENST00000314255 741 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AC098831.1-202ENST00000438821 336 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AC092910.1-201ENST00000482027 1129 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 DUTP2-201ENST00000519164 463 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 CD63-204ENST00000546939 779 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AD001527.2-201ENST00000622994 785 ntBASIC21.19■□□□□ 0.98
DDX4Q9NQI0 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
DDX4Q9NQI0 AL096828.2-201ENST00000567259 1965 ntBASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms