Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 PDPK2P-202ENST00000562415 1191 ntBASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 AC073592.5-201ENST00000624854 528 ntBASIC21.53■■□□□ 1.04
ZNF541Q9H0D2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ZNF541Q9H0D2 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 PRSS29P-201ENST00000440800 595 ntBASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 RPS15P9-201ENST00000494093 319 ntBASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 AC008667.4-201ENST00000607370 168 ntBASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 AC010507.1-201ENST00000633895 436 ntBASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
ZNF541Q9H0D2 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 AL049812.1-201ENST00000432563 2267 ntBASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 PAWRP1-201ENST00000451083 565 ntBASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 CCND1-203ENST00000536559 553 ntTSL 3 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 AC132938.6-201ENST00000623828 1655 ntBASIC21.51■■□□□ 1.03
ZNF541Q9H0D2 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 KRT8P47-201ENST00000604727 1398 ntBASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AL161938.1-201ENST00000569833 2180 ntBASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 STOM-202ENST00000347359 870 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AC096633.1-201ENST00000422446 749 ntBASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AP000344.2-201ENST00000512987 629 ntBASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 AC148477.5-201ENST00000625164 1645 ntBASIC21.5■■□□□ 1.03
ZNF541Q9H0D2 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 FAM58CP-201ENST00000435741 640 ntBASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 AC004877.2-201ENST00000623941 599 ntBASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.49■■□□□ 1.03
ZNF541Q9H0D2 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
ZNF541Q9H0D2 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms