Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 CBFB-203ENST00000561924 584 ntTSL 5 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 USF2-205ENST00000594064 1179 ntTSL 2 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 AL136038.4-201ENST00000603606 1261 ntBASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 CYP51A1P1-201ENST00000492267 1507 ntBASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 AC112777.1-201ENST00000540175 1423 ntBASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCGF1Q9BSM1 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 PTK2-216ENST00000519881 863 ntTSL 3 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 AC069148.1-201ENST00000608741 768 ntBASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 AC116407.4-201ENST00000623319 1061 ntBASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 AC079602.3-201ENST00000623931 403 ntBASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PCGF1Q9BSM1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 AC009065.1-201ENST00000564055 1225 ntBASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SPEG-225ENST00000617028 815 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 AL391807.1-203ENST00000604392 2365 ntBASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 AC073592.3-201ENST00000625118 1834 ntBASIC15.15■□□□□ 0.02
PCGF1Q9BSM1 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms