Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CFAP54Q96N23 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CFAP54Q96N23 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.61■□□□□ 0.41
CFAP54Q96N23 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CFAP54Q96N23 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
CFAP54Q96N23 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.61■□□□□ 0.41
CFAP54Q96N23 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.61■□□□□ 0.41
CFAP54Q96N23 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CFAP54Q96N23 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 AC027307.3-201ENST00000594262 1100 ntBASIC17.6■□□□□ 0.41
CFAP54Q96N23 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.6■□□□□ 0.41
CFAP54Q96N23 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 AC108073.2-201ENST00000464002 357 ntBASIC17.6■□□□□ 0.41
CFAP54Q96N23 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 AC093484.2-201ENST00000580996 2166 ntBASIC17.6■□□□□ 0.41
CFAP54Q96N23 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.6■□□□□ 0.41
CFAP54Q96N23 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CFAP54Q96N23 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 HILS1-202ENST00000545329 423 ntBASIC17.59■□□□□ 0.41
CFAP54Q96N23 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.59■□□□□ 0.41
CFAP54Q96N23 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 AC004835.2-201ENST00000603762 682 ntBASIC17.59■□□□□ 0.41
CFAP54Q96N23 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 Z82202.1-201ENST00000623446 1880 ntBASIC17.59■□□□□ 0.41
CFAP54Q96N23 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.59■□□□□ 0.41
CFAP54Q96N23 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CFAP54Q96N23 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CFAP54Q96N23 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CFAP54Q96N23 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.58■□□□□ 0.41
CFAP54Q96N23 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.58■□□□□ 0.41
CFAP54Q96N23 ACTG1P14-201ENST00000446382 1122 ntBASIC17.58■□□□□ 0.41
CFAP54Q96N23 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.58■□□□□ 0.41
CFAP54Q96N23 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.58■□□□□ 0.41
CFAP54Q96N23 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.58■□□□□ 0.41
CFAP54Q96N23 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CFAP54Q96N23 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CFAP54Q96N23 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CFAP54Q96N23 AL499627.1-201ENST00000569373 2188 ntBASIC17.58■□□□□ 0.4
CFAP54Q96N23 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 AC006504.4-201ENST00000592118 1568 ntBASIC17.58■□□□□ 0.4
CFAP54Q96N23 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 BID-204ENST00000399767 2129 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 HNRNPA1P40-201ENST00000426371 1278 ntBASIC17.58■□□□□ 0.4
CFAP54Q96N23 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 AC073592.4-201ENST00000623827 446 ntBASIC17.58■□□□□ 0.4
CFAP54Q96N23 AL358472.5-202ENST00000641448 1267 ntBASIC17.58■□□□□ 0.4
CFAP54Q96N23 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CFAP54Q96N23 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.58■□□□□ 0.4
CFAP54Q96N23 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms