Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 REXO2-216ENST00000544196 452 ntTSL 3 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
LINC00477Q96M19 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC13.56□□□□□ -0.24
LINC00477Q96M19 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 LINC01126-201ENST00000623515 1646 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 LTB4R2-202ENST00000528054 3092 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 RBM17P1-201ENST00000453646 1190 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 GXYLT1P6-201ENST00000456472 1187 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 FITM1-202ENST00000559294 800 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 Z99916.2-201ENST00000604037 246 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 AC022898.2-201ENST00000616822 1312 ntBASIC13.55□□□□□ -0.24
LINC00477Q96M19 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
LINC00477Q96M19 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
LINC00477Q96M19 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 AC006116.8-202ENST00000587620 1550 ntBASIC13.54□□□□□ -0.24
LINC00477Q96M19 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 NME9-203ENST00000383180 2133 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 NARF-204ENST00000390006 1766 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 AC007663.1-201ENST00000438948 1240 ntBASIC13.54□□□□□ -0.24
LINC00477Q96M19 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 DUTP2-201ENST00000519164 463 ntBASIC13.54□□□□□ -0.24
LINC00477Q96M19 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 AL512604.3-201ENST00000569583 964 ntBASIC13.54□□□□□ -0.24
LINC00477Q96M19 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC13.54□□□□□ -0.24
LINC00477Q96M19 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC13.54□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms