Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 HMGA1P5-201ENST00000412453 271 ntBASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 AC012306.2-201ENST00000609350 630 ntBASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCHCR1Q8TD31 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 SDHAP2-201ENST00000455183 2001 ntBASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCHCR1Q8TD31 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 INGX-201ENST00000359239 846 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 ECEL1P3-201ENST00000427961 737 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 AC009065.1-201ENST00000564055 1225 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 AC005363.2-201ENST00000618631 242 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 AC036111.1-201ENST00000533973 1582 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 HOXB1-202ENST00000577092 1414 ntBASIC18.83■□□□□ 0.6
CCHCR1Q8TD31 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCHCR1Q8TD31 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCHCR1Q8TD31 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms