Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 Z83851.2-201ENST00000609564 659 ntBASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 AC027601.4-201ENST00000611259 610 ntBASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 AC107918.4-202ENST00000641623 219 ntBASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
USHBP1Q8N6Y0 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 AC092183.1-201ENST00000469884 875 ntBASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 NMU-202ENST00000505262 693 ntTSL 3 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 UNC93B6-202ENST00000528242 690 ntBASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
USHBP1Q8N6Y0 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
USHBP1Q8N6Y0 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC23.7■■□□□ 1.39
USHBP1Q8N6Y0 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 PHGDH-209ENST00000641074 1780 ntBASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC23.7■■□□□ 1.38
USHBP1Q8N6Y0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 AC007967.2-201ENST00000432613 625 ntBASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 AC105339.3-201ENST00000560043 636 ntBASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 AC010327.4-202ENST00000591484 748 ntBASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 CAND2-206ENST00000626378 333 ntTSL 5 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC23.69■■□□□ 1.38
USHBP1Q8N6Y0 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 TBC1D3P5-201ENST00000579401 1545 ntBASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
USHBP1Q8N6Y0 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 INIP-202ENST00000374236 874 ntTSL 2 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 AC005104.2-201ENST00000427818 678 ntBASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 FAM197Y3-203ENST00000618346 717 ntBASIC23.67■■□□□ 1.38
USHBP1Q8N6Y0 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms